FATSLIM: Analysis of Lipid Membrane MD Simulations Made Easy
نویسندگان
چکیده
منابع مشابه
Electroporation of archaeal lipid membranes using MD simulations.
Molecular dynamics (MD) simulations were used to investigate the electroporation of archaeal lipid bilayers when subjected to high transmembrane voltages induced by a charge imbalance, mimicking therefore millisecond electric pulse experiments. The structural characteristics of the bilayer, a 9:91 mol% 2,3-di-O-sesterterpanyl-sn-glicerol-1-phospho-myo-inositol (AI) and 2,3-di-O-sesterterpanyl-s...
متن کاملAbdominal Fluid Collection and Analysis Made Easy
Introduction Dogs and cats often present to veterinary clinics because of the appearance of a pendulous or enlarged abdomen or for clinical signs secondary to abdominal fluid accumulation. Abdominal fluid can accumulate from a variety of disease processes including many serious conditions that require immediate intervention. Sometimes the condition that led to the accumulation of abdominal flui...
متن کاملSnowfall: Hardware Stream Analysis Made Easy
In this demonstration, we showcase Snowfall, a compiler tool for low-level stream analysis. Comparable to scanner generators for software-based systems (e.g., lex/flex), Snowfall can be used to decode incoming data streams in hardware, react to low-level patterns in a stream, and perform initial input data analysis. Snowfall plays well together with Glacier, a query-to-hardware compiler that we...
متن کاملMD simulations of spontaneous membrane protein/detergent micelle formation.
The in vitro study of membrane proteins for the purpose of physicochemical analysis or structure determination often relies upon successful reconstitution into detergent micelles. Moreover, a number of biological processes such as membrane protein folding and transport rely on lipid interactions which may resemble the micellar environment. Little is known about the structures of these micelles ...
متن کاملCoarse-grained MD simulations of membrane protein-bilayer self-assembly.
Complete determination of a membrane protein structure requires knowledge of the protein position within the lipid bilayer. As the number of determined structures of membrane proteins increases so does the need for computational methods which predict their position in the lipid bilayer. Here we present a coarse-grained molecular dynamics approach to lipid bilayer self-assembly around membrane p...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Biophysical Journal
سال: 2014
ISSN: 0006-3495
DOI: 10.1016/j.bpj.2013.11.2272